 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_56769.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
NAC |
| Protein Properties |
Length: 323aa MW: 36039.4 Da PI: 7.6041 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_56769.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176.6 | 6.7e-55 | 24 | 153 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL + ++e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v++
MLOC_56769.2 24 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLTEhcgIGYEEQSEWYFFSFKDRKYPTGTRTNRATMAGFWKATGRDKAVHE 119
69****************************.9***************853542334667*************************************9 PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
+++l+g++ktLvfykgrap+g+ktdW+mheyrle
MLOC_56769.2 120 -RSRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 153
.999*****************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010200 | Biological Process | response to chitin |
| GO:0048759 | Biological Process | xylem vessel member cell differentiation |
| GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
| GO:1990110 | Biological Process | callus formation |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MHIQPMRAGG GGGVDHMDSM ESCVPPGFRF HPTDEELVGY YLRKKVASQK IDLDVIRDID 60
LYRIEPWDLT EHCGIGYEEQ SEWYFFSFKD RKYPTGTRTN RATMAGFWKA TGRDKAVHER 120
SRLIGMRKTL VFYKGRAPNG QKTDWIMHEY RLETDENAPP QEEGWVVCRA FKKRTAYPNR 180
GMAERWGSNY SYNEVHAMGG APFADPNMAS TYAAAAQMGR SGSFKEEAEQ LDGAAALLRY 240
TSSHLVELPQ LESPSAPLPR KKARAPEEED AASGASRRRP RKLAQADSAA TTDWRALDKF 300
VASQLSPGGE CAALEATAAT TAA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JQ693422 | 0.0 | JQ693422.1 Brachypodium distachyon SWN1 (SWN1) mRNA, complete cds. |
