PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56753.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 382aa    MW: 41260.4 Da    PI: 7.0022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56753.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l+ +++ +G  +W+++++  g+ R++k+c++rw +yl
     MLOC_56753.1 13 RGLWSPEEDEKLLSYITAHGHSCWSAVPKNAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding49.97.3e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
     MLOC_56753.1  66 RGTFSEQEERTILDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-26463IPR009057Homeodomain-like
PROSITE profilePS5129416.6860IPR017930Myb domain
SuperFamilySSF466898.99E-2810107IPR009057Homeodomain-like
SMARTSM007171.9E-121262IPR001005SANT/Myb domain
PfamPF002491.2E-141360IPR001005SANT/Myb domain
CDDcd001677.54E-111660No hitNo description
PROSITE profilePS5129425.33861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2464116IPR009057Homeodomain-like
SMARTSM007172.1E-1565113IPR001005SANT/Myb domain
PfamPF002491.2E-1466109IPR001005SANT/Myb domain
CDDcd001671.79E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLLSYITA HGHSCWSAVP KNAGLQRCGK SCRLRWINYL  60
RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPKTHNLLPA SKNLLHVHDG TGSGSNPSNN PAAGTQFHSP NGNRNGCATP PFTISSPTKA  180
VYDAAMVAPP VVAPGLYDVP NPGVLMGQHD RDHQAAVVMQ QGYPYIHNNG SGLLMSFRDH  240
NAAGIHPSMD FMNGSSHSSS SMEYAAGMPN GDVFNRGVAV FMDETAAMWA TVPDPGMGAR  300
VEMAYQQQQH HGLGQDEVAG PPPPPLINGG SSGSKGLDMM GVSSEVYGSA GTTTAFDIEL  360
MESCGIFCGA AGNDMEQLQW DC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-32131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56753.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040069e-47AP004006.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1197_D06.
GenBankAP0042599e-47AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149639e-47AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126159e-47CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166429.10.0transcription factor MYB26-like
TrEMBLM0X3N30.0M0X3N3_HORVV; Uncharacterized protein
STRINGMLOC_56753.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-81myb domain protein 67