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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_5666.3 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
C3H |
Protein Properties |
Length: 338aa MW: 36917.6 Da PI: 8.5398 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_5666.3 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 48.5 | 1.4e-15 | 264 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + +tG C+yGd+C+FaHg
MLOC_5666.3 264 FKTELCNKWEETGACPYGDQCQFAHG 289
79***********************9 PP
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2 | zf-CCCH | 18.3 | 4.1e-06 | 302 | 327 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykte Cr + + C+yG rC+F H+
MLOC_5666.3 302 YKTEVCRMVLNGEVCPYGHRCHFRHS 327
9******999966**********998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
GO:0003729 | Molecular Function | mRNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MQEALVSPAN ADRLRSAFEL KPYAFGDQRL SSSPRYLPSG DDGLYRCSSP FSPSLGFSSP 60 SPLATSVSLS PSSSGSLVDD GDYDGAAAAD ATGHRLQLAR LALQYQEVAD RYEMCLSHLA 120 EAVDEAAVLR RENTELRVAN SDLARRVALL GGKETAAVVI ADEIRRFRLG EHKASKQRAP 180 EKLAVLPKSI SVRSNDYLKM NQAAPAAATP PAYSRKPRAA NVNPSPVTQR AYLGLGVDGG 240 KKGEEHKAKQ DAAGELDVYN QGMFKTELCN KWEETGACPY GDQCQFAHGV SELRPVIRHP 300 RYKTEVCRMV LNGEVCPYGH RCHFRHSLTA AERLLRSR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK360544 | 0.0 | AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13. |