PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

MLOC_56598.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 457aa MW: 49527.2 Da PI: 6.1742

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56598.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	75	134	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s MLOC_56598.3 75 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 134 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	72	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.733	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MKGDELREGK DNEMEVDAPQ AKENAETANS STLDHKKDDQ AQRSNAEEKA ASDPKEENEK 60 KSNDESGQDK VLKKPDKIIP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 120 NVPVGAGRRK SKNSALHYRQ LLMAPDCLLG SRVDIPNTVN PEVLASLPSI PTQSASRNET 180 VLKFGPEVPL CESMVSVLNI EEQNVTNAGT VPRDETREDN LCASSTTSNN GLPSNAVPAG 240 QNGAPVYCNG VGPVPQYYLG APFMYPWSMG WNNLPVMVPG GSMPESTSPS ESCSTSSAPW 300 MNSPMMPGSR LPAPTFPYPV VPPALWGCLP SWPAAAWNTP WIGTNGCISP SGSSNSSCSG 360 NGSPTLGKHS RDPNPQKDDK EEKSLWVPKT LRIDDPDEAA KSSIWATLGI KPGDPGVFKP 420 FQFKGESKGQ PTDARPARAL QANPAAFSRS QSFQESS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MKGDELREGK DNEMEVDAPQ AKENAETANS STLDHKKDDQ AQRSNAEEKA ASDPKEENEK  60
KSNDESGQDK VLKKPDKIIP CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR  120
NVPVGAGRRK SKNSALHYRQ LLMAPDCLLG SRVDIPNTVN PEVLASLPSI PTQSASRNET  180
VLKFGPEVPL CESMVSVLNI EEQNVTNAGT VPRDETREDN LCASSTTSNN GLPSNAVPAG  240
QNGAPVYCNG VGPVPQYYLG APFMYPWSMG WNNLPVMVPG GSMPESTSPS ESCSTSSAPW  300
MNSPMMPGSR LPAPTFPYPV VPPALWGCLP SWPAAAWNTP WIGTNGCISP SGSSNSSCSG  360
NGSPTLGKHS RDPNPQKDDK EEKSLWVPKT LRIDDPDEAA KSSIWATLGI KPGDPGVFKP  420
FQFKGESKGQ PTDARPARAL QANPAAFSRS QSFQESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56598.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189771.1	0.0	cyclic dof factor 2-like
TrEMBL	M0X2Y2	0.0	M0X2Y2_HORVV; Uncharacterized protein
STRING	MLOC_56598.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-65	cycling DOF factor 2