PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56117.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 316aa    MW: 34798 Da    PI: 6.2867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56117.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10147195355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MLOC_56117.1 147 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 195
                   58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.94E-11142199No hitNo description
SuperFamilySSF474596.02E-17142211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16144211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8147195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYSGQQSDQA PAANSGKEFL EGNWGSVAMH QKMGYDSAAY GFQAYGMELE EGQGTFSQNI  60
HMSDEHSGGV KKRKGTNDCI ALLNPSASSK NVGDQQTEVS SQPESNSMER DNRKISPKTQ  120
SKEDSSDGDG TKENYVHLRA KRGQATNSHS LAERLRRKKI SERMKLLQDL VPGCNKITGK  180
AVMLDEIINY VQSLQRQVEF LSMKLATVNP ELGFDIEQIL SKQMMLSQDR HLGFYGADPG  240
ASALIAHFNQ GMMHPDMICN ASNPVGALHG TIHDISTMNQ MPEMWETLQN IPHMNFNPAV  300
AADSSTNNAG PMKIEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56117.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198221.10.0transcription factor bHLH49-like
RefseqXP_020198222.10.0transcription factor bHLH49-like
RefseqXP_020198223.10.0transcription factor bHLH49-like
TrEMBLF2DAP50.0F2DAP5_HORVV; Predicted protein
STRINGMLOC_56117.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-57bHLH family protein