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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56065.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 21934.3 Da PI: 6.5239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.1e-11 | 120 | 167 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + kK +K++ L ++eY+k+L+ MLOC_56065.2 120 QEHVIAERKRREKLQQQFVSLATIVPGL-----KKTDKISLLGSTIEYVKELE 167 5799************************.....9****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.265 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-9 | 120 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.8E-16 | 121 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.16E-15 | 121 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.95E-10 | 122 | 171 | No hit | No description |
SMART | SM00353 | 1.6E-10 | 123 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MYQQEGVPVP GMDQQFAEPP LPGHQEQYYT SPMATPSFHT SRSSNFASFG GSSSLPNLPF 60 GSATVKNELG QPPSSNFLSF GAGQAGTLNF SGGAWQHDGV EGTMQLQAPE RRSRAPANAQ 120 EHVIAERKRR EKLQQQFVSL ATIVPGLKKT DKISLLGSTI EYVKELEDKV RALEEQGSRR 180 SSESTTVFES KCRISAADND AA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 130 | ERKRRE |
2 | 126 | 131 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56065.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099732 | 1e-41 | AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence. | |||
GenBank | AC231512 | 1e-41 | AC231512.1 Oryza minuta clone OM__Ba0045O21, complete sequence. | |||
GenBank | AK288157 | 1e-41 | AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence. | |||
GenBank | AP014959 | 1e-41 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-41 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156973.1 | 1e-129 | transcription factor bHLH19-like | ||||
TrEMBL | A0A287PFC9 | 1e-147 | A0A287PFC9_HORVV; Uncharacterized protein | ||||
TrEMBL | M0X0I2 | 1e-147 | M0X0I2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56065.2 | 1e-148 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6401 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-22 | bHLH family protein |