PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56057.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 479aa    MW: 51309.6 Da    PI: 5.9877
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56057.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS270.36.4e-83744682374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +lLl+ A a + gd+++a  +L+++  +as +g dp+qR+aayf+ ALa+rl+          +p++++ ++ +e++ a+++f+++sP+++f+h+t
  MLOC_56057.1  74 MRLLLSSAVAGEVGDTHAAAVALQEVYRHASFRGgDPVQRVAAYFADALASRLLL---------SPQPAQATTRQEQFLAFTMFYQASPLYQFAHFT 161
                   6899**************************99999*******************7.........555555556899999****************** PP

          GRAS  98 aNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpeg................ppslRiTgvgspesgskeeleetgerLakfAeel.gvp 175
                   aNqaI+ea+e    +r+H++Dfd+s G+QWp+L+q+L++ ++                 p slRiTg+g+    s++el+ t+ rLa+fA+ + +++
  MLOC_56057.1 162 ANQAIMEAFEAGgtRRLHVVDFDVSFGFQWPSLIQSLSDAAATssslsshddsgdscdePVSLRITGFGA----SADELRDTEARLARFADGCpNLR 254
                   *********976669**********************987733356777888889999677*********....9****************9769** PP

          GRAS 176 fefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh..nsesFlerflealeyysa 266
                   fef+ ++ +   +d + ++++++p  +++Vnlv+   +   + +s +   ++ L  ++slsP +v ++++    a +  +s+s+l rf+  l+yy+a
  MLOC_56057.1 255 FEFEGVLNSgPEDDGRHDRIKTDPAATVVVNLVFPAAQNA-RAGSWDP--RSALAHIWSLSPSLVFLIDKVdegAGRcgGSASLLPRFAANLRYYAA 348
                   *****977756777799*****************887776.5555555..79**************9876333444448899*************** PP

          GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerr......erhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg...yrvee 353
                   +f+sl++ lp++s eri +E+  lg ei+++ a+  ++r        +++t + W+erle+aGF+ ++ls+++++qaklll++ + + g   +rv e
  MLOC_56057.1 349 VFESLHECLPADSAERIAIEKDHLGVEISDAMATLDRRRHdgdraaDQNQTSRGWKERLESAGFEDARLSSRTVSQAKLLLKMKSgGCGgggFRVME 445
                   *********************************977766422111257889999***************************98664333344***97 PP

          GRAS 354 e..sgslvlgWkdrpLvsvSaWr 374
                       +++ lgW+dr+Lv++SaWr
  MLOC_56057.1 446 AgdGKAMALGWRDRALVTASAWR 468
                   65245555**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.9647442IPR005202Transcription factor GRAS
PfamPF035142.2E-8074468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MNLTLSLGVN GGGAAAKKRK VMDGVGDVGV LGAADGCDRA TVMRLLQARD RMVKVELDHD  60
VDGDVSGCGA SPLMRLLLSS AVAGEVGDTH AAAVALQEVY RHASFRGGDP VQRVAAYFAD  120
ALASRLLLSP QPAQATTRQE QFLAFTMFYQ ASPLYQFAHF TANQAIMEAF EAGGTRRLHV  180
VDFDVSFGFQ WPSLIQSLSD AAATSSSLSS HDDSGDSCDE PVSLRITGFG ASADELRDTE  240
ARLARFADGC PNLRFEFEGV LNSGPEDDGR HDRIKTDPAA TVVVNLVFPA AQNARAGSWD  300
PRSALAHIWS LSPSLVFLID KVDEGAGRCG GSASLLPRFA ANLRYYAAVF ESLHECLPAD  360
SAERIAIEKD HLGVEISDAM ATLDRRRHDG DRAADQNQTS RGWKERLESA GFEDARLSSR  420
TVSQAKLLLK MKSGGCGGGG FRVMEAGDGK AMALGWRDRA LVTASAWRPC RRSVGKNEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3710846953380Protein SCARECROW
5b3h_A1e-3710846952379Protein SCARECROW
5b3h_D1e-3710846952379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56057.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173956.10.0scarecrow-like protein 23
TrEMBLM0X0G70.0M0X0G7_HORVV; Uncharacterized protein
STRINGMLOC_56057.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-42GRAS family protein