PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55926.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 324aa    MW: 33910.1 Da    PI: 8.3728
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55926.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer36.79.7e-128303557
   ZF-HD_dimer 35 egtaaalkCaACgCHRnFHRrev 57
                  ++++a+ kCaACgCHRnFHR  +
  MLOC_55926.1  8 TADPASYKCAACGCHRNFHRLVM 30
                  47899***************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-4127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.7E-8928IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.86E-16161228IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28162229IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-23170226IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MPVVELNTAD PASYKCAACG CHRNFHRLVM VEGSPPPPPP QPQPALLPAP PMPMPMPMPA  60
TVLHGLPQRA PETPDDRLPG VDGDDSDSDS DGSEYDDERS VSPPQHPPSA HHLAPVAQQP  120
PPYMSSAPHP HMLLSLNSSA PGAPAQGHSR LPAQLSPATA PPPHAMMPAR KRFRTKFTAE  180
QKQRMQELSE RLGWRLQKRD EGVVDEWCRD IGVSKGVFKV WMHNNKHNYL GGHSARRSAS  240
AAASSAATTP TAPAAGGPFR LSPATGAPPA APFNPSASHS SPAPTATGFN MNGTASSAST  300
ATATPAPIFA AGRTVNGASS PQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-211702281775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743480.0AK374348.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061N06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146651.11e-137zinc-finger homeodomain protein 9-like
SwissprotQ6ER219e-55ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLF2EDX30.0F2EDX3_HORVV; Predicted protein (Fragment)
STRINGMLOC_55926.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-25zinc finger homeodomain 1