PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55870.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 298aa    MW: 31400.9 Da    PI: 8.2133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55870.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14110161155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  MLOC_55870.3 110 QRMTHIAVERNRRRLMNDHLASLRSLIPSD---YIPRGDQATVVGGAIDYVKQLE 161
                   79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-15101169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-11108161No hitNo description
PROSITE profilePS5088814.589109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13110164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVVVAVMDQC WADQAAASAS AAQVPFLALL QGAMGDGGPG AKRESYSGGA GFACRPAASD  60
VDLLESCVTQ LPAPPAIEAP AAKRRKRPRT RPRAAPPPEK RKKPEEAECQ RMTHIAVERN  120
RRRLMNDHLA SLRSLIPSDY IPRGDQATVV GGAIDYVKQL EQQLVALQAL AAAQRGEGPV  180
GTAATAASDG VFVSPQYTSF SEARGIGGGV DVEAMSAVGG HVRVRVAGRR WPGRLVRAVA  240
AMENLRMAVL HLAVTSVGHD AVVYCFNLKM EDGCEVSTAD EVATVVHQIF AYAAGSCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
184102RKRPRTRPRAAPPPEKRKK
2110121RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55870.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554700.0AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151391.11e-159transcription factor bHLH57-like
TrEMBLM0WZM40.0M0WZM4_HORVV; Predicted protein
STRINGMLOC_55870.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.18e-40bHLH family protein