PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55768.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 355aa    MW: 38555.3 Da    PI: 4.9418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55768.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11186228754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+++L
  MLOC_55768.1 186 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVNEL 228
                   89*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16182254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-13185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9185228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-4186233No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15186249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDHLDEQSFL DELMSLRREE APALGPWQAY PGSRMTMTTS DLLFYGDEVA DEARSGMDLA  60
GPFQQPMAPP PAPAAPAHRP HEEFNFDYLS EVCNPYRSCI GGVHGPGVVH ASSQALAQSQ  120
YARQDTMAEN GTSSGKLHHG GGGSSLSPSF VFAGVTGESS EMTKGVFSGA QPRSKLNGGT  180
TSKNLMAERR RRKRLNDRLS MLRSIVPKIS KMDRTSILGD TIDYVNELTE RIKTLEEEIG  240
ATPEELNLLN TRKNFSSCTA EEMPMRNSTK FVIEKQGDAE TRIDICCATS PGVLISTVSA  300
LDVLGLEIEQ CVISCFGDFA MQASCSQEEG RSRVTSTDEI KQALFTSAGY GGKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187194ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55768.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674520.0AK367452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2057G19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150230.10.0transcription factor bHLH61-like
SwissprotQ9LSL14e-57BH093_ARATH; Transcription factor bHLH93
TrEMBLM0WZ370.0M0WZ37_HORVV; Uncharacterized protein
STRINGMLOC_55768.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-59beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]