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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YB | ||||||||
Protein Properties | Length: 155aa MW: 15926.2 Da PI: 9.0684 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 27.8 | 6.1e-09 | 104 | 154 | 26 | 76 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 + kda e + fi ++++ a+d c+ kr+tin++d++ al ++ f MLOC_55519.1 104 IVNKDAMAAFAESARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEF 154 47899999*************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.0E-22 | 69 | 154 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.56E-18 | 74 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-8 | 105 | 149 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAGEAKEPQA DGSKPKVKKP KAAAAVAQDG DGAKVKAKKP KAGQEGDGAK AKKAAAAVAA 60 APVAAMTEAE VEELPKAIVR RLVKDKLARV ASGGEGAEGG AEVIVNKDAM AAFAESARIF 120 IHYLSATAND VCKDGKRQTI NAEDVFKALD EIEFP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55519.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371068 | 0.0 | AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238535.1 | 3e-49 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A287MWK9 | 1e-101 | A0A287MWK9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_55519.1 | 1e-102 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 6e-25 | nuclear factor Y, subunit B11 |