PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55203.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family DBB
Protein Properties Length: 215aa    MW: 22203.4 Da    PI: 4.6999
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55203.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.7e-06747639
      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  C+ +++ e+   C  ++  lC+ C  + H+        H+v
  MLOC_55203.1  7 CDACGQAEAAVLCCADEAALCRRCDAAVHSAnklagrhHRV 47
                  *****************************668889996655 PP
2zf-B_box25.82.3e-0871106437
      zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 
                   + C+ ++ek   +fC +++ llC++C ++ H    H
  MLOC_55203.1  71 PACDICQEKTGYFFCVEDRALLCRSCDVAVHTAtpH 106
                   67****************************955663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-9249IPR000315B-box-type zinc finger
PROSITE profilePS501199.442749IPR000315B-box-type zinc finger
CDDcd000219.93E-7749No hitNo description
PROSITE profilePS501199.05868115IPR000315B-box-type zinc finger
SMARTSM003361.1E-1368115IPR000315B-box-type zinc finger
PfamPF006431.3E-671111IPR000315B-box-type zinc finger
CDDcd000211.08E-871115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLMKIGCDAC GQAEAAVLCC ADEAALCRRC DAAVHSANKL AGRHHRVALL SSTTPAGSSS  60
PGTGDDGGSH PACDICQEKT GYFFCVEDRA LLCRSCDVAV HTATPHASTH RRFLITGVRV  120
GVDQDHIGDV SGATVVSPSS SSANGSNSMP TSENFAIANG QRSEDGAGLI GGGEDDIGQQ  180
QQWPWSDIFA DDGVGMDQHQ CYPGFSEPGS SSLTG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55203.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583830.0AK358383.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167650.11e-130B-box zinc finger protein 22-like
SwissprotQ9SYM21e-44BBX22_ARATH; B-box zinc finger protein 22
TrEMBLF2D3C61e-156F2D3C6_HORVV; Predicted protein
STRINGMLOC_55203.11e-156(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-43light-regulated zinc finger protein 1