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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_5512.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
RAV |
Protein Properties |
Length: 320aa MW: 34832.4 Da PI: 5.4698 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_5512.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 37.9 | 4.4e-12 | 47 | 95 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++kGV + +grW A+I++ + r++lg+f ++ Aa+a++ a+++++g
MLOC_5512.1 47 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFPDEDAAARAYDVAALRFRG 95
689***9788.8*********3.....5**********99*************98 PP
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2 | B3 | 95.6 | 3.2e-30 | 171 | 263 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+ tpsdv+k++rlv+pk++ae+h g++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++
MLOC_5512.1 171 FEKAVTPSDVGKLNRLVVPKQHAEKHfppttaaaTGSNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 263
89****************************99996666899**************************************************54 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MASGKPTNPG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW 60 GAQIYEKHSR VWLGTFPDED AAARAYDVAA LRFRGPDAVI NHQRPTAAEE AGSSSSRSEI 120 DPELGFLADH SKAEIVDMLR KHTYDDELRQ GLRRGRGRAQ PTPAWARELL FEKAVTPSDV 180 GKLNRLVVPK QHAEKHFPPT TAAATGSNGK GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT 240 KGWSRFVKET GLRAGDTVAF YRSAYGNDTE DQLFIDYRKM NRDDEAADAA ISEENETGHV 300 AVKLFGVDIA GGGMAGSSGG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |