PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54810.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 267aa    MW: 31001.7 Da    PI: 9.6276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54810.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.1e-12211031398
                   TT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3  13 sgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++ ++lp kfa+  +g   ++++l+l+   ++   W + + ++  + +++l++GW++F++a++L+ g f+++++dg++    ++kvf+
  MLOC_54810.5  21 LKKMRLPDKFARLLDGR--RPRELKLREagRQRLLWVMDVVFDADG-HMYLGRGWEQFARAHDLRLGHFLILSYDGHTVL--TMKVFD 103
                   45589******888888..455677776326668899999777776.6679***********************986555..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.1399105IPR003340B3 DNA binding domain
CDDcd100174.47E-1510103No hitNo description
SuperFamilySSF1019361.82E-1711111IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-1012105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-1512107IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-1020103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMEEETALGF EFFLVVLPNS LKKMRLPDKF ARLLDGRRPR ELKLREAGRQ RLLWVMDVVF  60
DADGHMYLGR GWEQFARAHD LRLGHFLILS YDGHTVLTMK VFDGSMCRRD YQHHDDTTSG  120
SSSASGNTLG VSKMSNPCDS DGSQNERSYS SEELSEDSLS VDNSVESANL KKLSNNYALS  180
SHCRLTKAQK MKINAVVKKI KPKFKMLVVQ MKKSNIRRYT LVCKFYHLYI FYEKGSLFIV  240
ILFKSVRILV LNQNSEQYFY HEIHMHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54810.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198708.13e-93B3 domain-containing protein Os03g0619600-like
TrEMBLA0A287MJP51e-144A0A287MJP5_HORVV; Uncharacterized protein
STRINGMLOC_54810.21e-146(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.19e-11B3 family protein