PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_54725.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 414aa    MW: 45615.3 Da    PI: 5.1656
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_54725.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof41.33.3e-13357389236
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaC 36 
                   +e  l+cprC+stntkf  +nn sl+qP +fC++C
  MLOC_54725.5 357 PEPGLNCPRCNSTNTKF--FNNNSLTQPHHFCREC 389
                   567899**********8..9*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF078875.8E-39123277IPR012416CALMODULIN-BINDING PROTEIN60
PfamPF027012.5E-11361389IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006950Biological Processresponse to stress
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTILCDCSLD GSFRCGQVLL QWDKPHVEPK EHWNFLDELM PLHSTQSRFY GESFPTTSLM  60
DKAHKLLASN SSGDSVLKMI TIITSRATQA PQRRGILIRP IEPYDSDADI FRPPVKKQRN  120
AKYQLRFVNS VCNDYYTQEQ IKSENGNLLK VALYDENNLV VTSGPLSSAS VEVVLLHGDF  180
NADGQDYWTS EEFSSCLVHP QSVEEPPALV GDCALALTDG ETDLGNISFQ ISSFHARTGK  240
FKMGVEIKNV REASAQEGIT SPFLVRVRQG EESSRHRITS PEALLRVRME LPKQVCGPLQ  300
CDARENVCAS PDQSSPERND LVASRAEDDD SMVQSGSGVL LFPAPRPPSE QVQVPQPEPG  360
LNCPRCNSTN TKFFNNNSLT QPHHFCRECG LGLGATATLG MTAVPAADCD IAGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_54725.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699110.0AK369911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2100O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6EMV00.0A0A3B6EMV0_WHEAT; Uncharacterized protein
STRINGMLOC_54725.20.0(Hordeum vulgare)