PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_54157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 22860.6 Da PI: 6.3327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.8e-10 | 62 | 102 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L MLOC_54157.1 62 ARERRHRISDRFRVLRSLVPGG-----SKMDNVSMLEQAIHYVKFL 102 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.066 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 58 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.01E-14 | 59 | 107 | No hit | No description |
SMART | SM00353 | 9.2E-13 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-13 | 59 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-7 | 62 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDPYHYENIH DPHGCSFPVH PQPPFLLHHY PAAALAESRV RGGAGRRRSG AKLSTDPQSV 60 AARERRHRIS DRFRVLRSLV PGGSKMDNVS MLEQAIHYVK FLKAQVSLHQ AMLMQHEEGC 120 GGGHGEFDGA PGEVTPMELP AAQALQEVMS CYYAEAHQVE ELDLCAGQMS SSSHDLPPLP 180 SCVFDEESAA ACYSGCSLQA GEIAHAHGSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_54157.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC256238 | 0.0 | AC256238.1 Hordeum vulgare clone HV_Mba017-J04, complete sequence. | |||
GenBank | AK373411 | 0.0 | AK373411.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3030D09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194490.1 | 1e-127 | transcription factor LAX PANICLE-like | ||||
Swissprot | Q7XAQ6 | 1e-55 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | F2EB86 | 1e-152 | F2EB86_HORVV; Predicted protein | ||||
STRING | MLOC_54157.1 | 1e-153 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 1e-27 | APRATAXIN-like |