 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_5337.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
C3H |
| Protein Properties |
Length: 297aa MW: 30833 Da PI: 10.2781 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_5337.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 20.7 | 7.1e-07 | 35 | 59 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
MLOC_5337.2 35 KSKPCTKFFSTAGCPFGSSCHFLHN 59
7789********************7 PP
|
| 2 | zf-CCCH | 23.7 | 8.5e-08 | 100 | 125 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ f Ck G++C+FaHg+
MLOC_5337.2 100 KTRLCNKFNTAEGCKWGNKCHFAHGE 125
9***********************96 PP
|
| 3 | zf-CCCH | 37.5 | 4.1e-12 | 263 | 288 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f + G C +GdrC+FaHg+
MLOC_5337.2 263 FKTKLCDNFNK-GSCTFGDRCHFAHGE 288
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.159 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.36 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-6 | 34 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-8 | 34 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.4E-5 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.4E-14 | 96 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-8 | 97 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.4 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.112 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.1E-5 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 6.8E-11 | 168 | 238 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 2.4E-15 | 169 | 237 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.99 | 169 | 233 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 2.3E-11 | 171 | 235 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 5.55E-15 | 171 | 263 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.02E-13 | 171 | 234 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-16 | 261 | 293 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.0E-8 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-9 | 262 | 292 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.943 | 262 | 289 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.6E-10 | 263 | 288 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MDAGRKRAVP EGTNGGAATK RARESESVQT GVGSKSKPCT KFFSTAGCPF GSSCHFLHNF 60
PGGHQAVSKM TNLGGPAVSA PPGRMPMGPG VPDGPPPSMK TRLCNKFNTA EGCKWGNKCH 120
FAHGERELGK PMLLNNSMAP PMGPRPNGHF QPPPMPGPDM VPPSTFGASA TAKISVDASL 180
AGAIIGKGGV NTKHISRMTG AKLAIRDNEA DPNHKNIELE GSFDQVNHAS AMVKELILRI 240
GGNAPPQAKN AGRGPAGGGG SNFKTKLCDN FNKGSCTFGD RCHFAHGESE LRKSAAA
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356664 | 0.0 | AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23. |
