 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_53086.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
NAC |
| Protein Properties |
Length: 336aa MW: 39042.7 Da PI: 6.7425 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_53086.3 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 176.7 | 6.3e-55 | 9 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
+ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
MLOC_53086.3 9 VPPGFRFHPTDEELVDYYLRKKVASRRIDL-NVIKDVDLYKIEPWDLQEkcriGPEEEQSDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKPIY 104
69****************************.99**************95343322335669************************************ PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
+ k+ lvg++ktLv+ykgrap+g+k+dW+mheyrle
MLOC_53086.3 105 A-KHCLVGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 139
*.899*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MSGSTQPQVP PGFRFHPTDE ELVDYYLRKK VASRRIDLNV IKDVDLYKIE PWDLQEKCRI 60
GPEEEQSDWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KPIYAKHCLV GMRKTLVYYK 120
GRAPNGQKSD WIMHEYRLET NENGPPQEEG WVVCRVFKKR LPTTRRDLDH DAPCWYVDDD 180
GPFMHDLNSP MRGMPPHHSM ALQEQHLQML NNTYKRELKL QYQMPNHHHV LNTIPHELES 240
PSSFHSLLVS QDDHQINVHH AQHHHVQLID HAVDDQAATD WRVLDKFVAS QLSNDAAKGV 300
DYAHEGDILQ LNEKVQEVAT DYASTSTSSS QVDPWK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-50 | 5 | 160 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-50 | 5 | 160 | 13 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 2e-50 | 5 | 160 | 13 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
