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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52982.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9634.82 Da PI: 11.6627 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.6e-15 | 15 | 59 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE++l++d+ ++G g+W+ I+r Rt+ q+ s+ qky MLOC_52982.2 15 PWSEEEHKLFLDGLDKYGRGDWRNISRFAVRSRTPTQVASHAQKY 59 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.082 | 7 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.0E-17 | 10 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-10 | 12 | 62 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.9E-17 | 13 | 63 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-11 | 15 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-10 | 15 | 60 | No hit | No description |
Pfam | PF00249 | 3.8E-12 | 15 | 59 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
RAGKPRREER RRGIPWSEEE HKLFLDGLDK YGRGDWRNIS RFAVRSRTPT QVASHAQKYF 60 IRQASAATRD SKRKSIHDIT TP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52982.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367373 | 1e-134 | AK367373.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055O05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567296.1 | 5e-49 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-34 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A287M011 | 2e-51 | A0A287M011_HORVV; Uncharacterized protein | ||||
TrEMBL | F2DU05 | 2e-51 | F2DU05_HORVV; Predicted protein | ||||
STRING | MLOC_52982.2 | 1e-53 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 5e-33 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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