PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52706.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 354aa MW: 38785.6 Da PI: 7.6503

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52706.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.7	9.4e-32	67	121	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF +av++LGG++kAtPk+i+++m+++gLtl+h+kSHLQk+Rl MLOC_52706.1 67 KPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSHLQKFRL 121 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.742	64	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-30	65	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-16	66	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-23	67	122	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	69	119	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-24	168	214	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PETKFFMKGQ GGAGGGDSGL 60 ILSTDAKPRL KWTPELHERF ADAVKKLGGP DKATPKAIMR VMGIPGLTLY HLKSHLQKFR 120 LSKNLQTQAN AVHAKNVYGF GVATDKACEG RGSPADHLNR ETNTSRSMHI NDALQMQIEV 180 QRRLHEQIEV QRHLQLRIEA QGKYLHSVLE KAQEALGKQH AVAGLEAAEP PQRLPELPSS 240 VRRGLLQNDG SADDSCLTAS EDILSMGLAA SATRRGCGAP FETSASASRE EDEECYLFLG 300 KPEGRREVRR DGCNAGAAFG AAAELDLSIG GVAAGSRRRP DGGQRLDLNG SGWD

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MCSMQAEHCQ YMTEPEQMYH QQQQQFHDHR QHMSSRPSLS PETKFFMKGQ GGAGGGDSGL  60
ILSTDAKPRL KWTPELHERF ADAVKKLGGP DKATPKAIMR VMGIPGLTLY HLKSHLQKFR  120
LSKNLQTQAN AVHAKNVYGF GVATDKACEG RGSPADHLNR ETNTSRSMHI NDALQMQIEV  180
QRRLHEQIEV QRHLQLRIEA QGKYLHSVLE KAQEALGKQH AVAGLEAAEP PQRLPELPSS  240
VRRGLLQNDG SADDSCLTAS EDILSMGLAA SATRRGCGAP FETSASASRE EDEECYLFLG  300
KPEGRREVRR DGCNAGAAFG AAAELDLSIG GVAAGSRRRP DGGQRLDLNG SGWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	67	123	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	67	123	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	67	123	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	67	123	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362598	0.0	AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161185.1	0.0	myb-related protein 1-like
Swissprot	Q9FK47	4e-74	PHLA_ARATH; Myb-related protein 1
TrEMBL	F2DFD1	0.0	F2DFD1_HORVV; Predicted protein
STRING	MLOC_52706.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	6e-70	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]