PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5269.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 663aa    MW: 71214 Da    PI: 8.076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5269.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.2e-07213233526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  MLOC_5269.1 213 PCPDFRK-GVCRRGDMCEYAHG 233
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.7E-6164IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.151165IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.19E-10173IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-13173IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.5833065IPR002110Ankyrin repeat
SMARTSM003561.1E-5208234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4212235IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-5213233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375213235IPR000571Zinc finger, CCCH-type
SMARTSM0035666243266IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.822243267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVAATYGSLA ALRLLLSVPS VDVNRRCGPD GTTALHCAAS GGSSSAVEAV RLLLVAGADA  60
DATDATGCRP ADVISVPPKM IDAKIALQDL LGLPKSGHGV LRVVTRATNL TSSPVSSPTA  120
EDARSPSAAV LMMSKFPDLP RVATSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS  180
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH  240
PAQYRTRLCK DGTGCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAA MEMAAAMGLM  300
PGSPSSVSAV MSPFTPPRSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR LRSSLNARDM  360
PIDDYSLLHD IDSQLINDLC YSRGLGSSAG GNHSSRTKSL NPSNLDDLFS AEMVSSPRYN  420
NADQGAMFSP SQKAAILNQF QQQQQLLSPI NTGFSPKAVD NQQMHSRSSL LQASLGISSP  480
GRMSPRCVES GSPMNSHLAA ALAQREKQQQ QQQHQQHQQT MRSLSSRDLG PSAARASAAV  540
GSPLSSSWSK WGSPSGAPDW GVNGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE  600
KQVTTAESIN SVRPSPLMHP TVSNGEGSSV HKQQLDRHDQ AAVIGALLEQ MQLDEQIGSL  660
AAT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753040.0AK375304.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3090H13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195419.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A287N1F90.0A0A287N1F9_HORVV; Uncharacterized protein
STRINGMLOC_5269.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]