PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52504.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 346aa    MW: 36719.8 Da    PI: 5.9964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52504.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.54.9e-27124183258
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y+geH++
  MLOC_52504.2 124 DDGHSWRKYGQKDILGAHHPRAYYRCTYQktqGCAATKQVQRADEDPALFDVIYHGEHTC 183
                   8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.804118181IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-27119183IPR003657WRKY domain
SuperFamilySSF1182902.62E-24122183IPR003657WRKY domain
SMARTSM007741.1E-38123185IPR003657WRKY domain
PfamPF031062.6E-26124183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEAVEGNGGG SGLVVTELSH IKELVKQLDV HLGGSPGLCK HLAQQIFAVT EKSIGIIRSG  60
HFNCPKRSAA GAGLDSPPLS ATPSPVSGVS NTPFKPNKKR KTSEKGRHQI RVSSAGGGAD  120
APADDGHSWR KYGQKDILGA HHPRAYYRCT YQKTQGCAAT KQVQRADEDP ALFDVIYHGE  180
HTCLHKTAAA MVQPDGQNQD AQSLLQNLSS SLTVKTEGLI AAGTQGWSTT TPFSFSSPAV  240
SGMTPPEHHP FSAPSTPENC FVSMPTSLEP SPATSGSNHM CFNPFQAQSE LQTMVSALVE  300
ATSMPPADTE EAGFAYWSFD DSALDVNSFD EDVTNFDISA FLASDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-22124183968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52504.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3555330.0AK355533.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1022C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200628.10.0WRKY transcription factor 6-like
TrEMBLF2CV810.0F2CV81_HORVV; Predicted protein (Fragment)
STRINGMLOC_52504.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-29WRKY DNA-binding protein 46