PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52316.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 796aa    MW: 85553.2 Da    PI: 6.4295
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52316.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-20135190156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ +++t++q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R++ k
  MLOC_52316.1 135 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRQLSLEPLQVKFWFQNKRTQIK 190
                   688999**********************************************9987 PP
2START186.41.5e-583145361206
                   HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
         START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                   ela +a++elv++a+++ep+Wv s   e + ++e+ + f+++         ++ea+r++ vv+m+++ lve l+d++ qW+  +     +a+tl+v+
  MLOC_52316.1 314 ELAVAAMEELVRMAQLGEPLWVPSLdsEALSEEEYARAFPRGALgpkspeLRSEASRETDVVIMNHVSLVEMLMDVR-QWSALFSsivsRAATLDVL 409
                   57899******************99889999********99877*********************************.99999999999******** PP

                   CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
         START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                   s+g      galqlm+ae+q++splvp Rd  f+Ry++q+++g w++vdvS+d  ++      +   +++ Sg+li++++ng+skvtwvehv+ ++ 
  MLOC_52316.1 410 STGvagnhdGALQLMSAEFQMPSPLVPtRDTQFLRYCKQHPGGAWAVVDVSLDGLRSAAR--VGGHFRRRASGCLIQEMPNGYSKVTWVEHVEAGDD 504
                   *******************************************************99876..3444447************************9876 PP

                   XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
                      h l+r+lv+sgla+ga++w++tl+rqce+
  MLOC_52316.1 505 AMmHDLYRPLVNSGLAFGARRWTSTLKRQCER 536
                   666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-23120190IPR009057Homeodomain-like
SuperFamilySSF466891.3E-19124192IPR009057Homeodomain-like
PROSITE profilePS5007117.167132192IPR001356Homeobox domain
SMARTSM003892.8E-18133196IPR001356Homeobox domain
PfamPF000461.8E-17135190IPR001356Homeobox domain
CDDcd000864.91E-19135193No hitNo description
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084840.629305539IPR002913START domain
SuperFamilySSF559611.4E-32307538No hitNo description
CDDcd088752.54E-111309535No hitNo description
SMARTSM002342.5E-49314536IPR002913START domain
PfamPF018523.5E-48315536IPR002913START domain
SuperFamilySSF559612.61E-23556780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MPGGMMIPGR NMIGRSNGAG VAYASSSSSA LSLGQNLMDG MHHHQLPAML QHQMVDHHLL  60
LPQHHHHPHQ QAATSDSDAR GPHGGGNNNS SNNNEELEMS KSGTGSDNNL DGEGGGGGGE  120
DDEQEDPAGQ HPRKKKRYHR HTQHQIQELE AFFKECPHPD DKQRKELSRQ LSLEPLQVKF  180
WFQNKRTQIK TQHERQENTA LRTENDKLRA ENMRYKEALA NASCPNCGGP AAIGEMSFDE  240
HHLRIENARL RDEIDRISAI AAKYVGGKPG SGVAVASAAY PPLPPQSSGR SALDHLGMPG  300
MFGGAEFDKP MVIELAVAAM EELVRMAQLG EPLWVPSLDS EALSEEEYAR AFPRGALGPK  360
SPELRSEASR ETDVVIMNHV SLVEMLMDVR QWSALFSSIV SRAATLDVLS TGVAGNHDGA  420
LQLMSAEFQM PSPLVPTRDT QFLRYCKQHP GGAWAVVDVS LDGLRSAARV GGHFRRRASG  480
CLIQEMPNGY SKVTWVEHVE AGDDAMMHDL YRPLVNSGLA FGARRWTSTL KRQCERLASA  540
MATVPSSGGD VITTAEGRRS MLKLAERMTA SFCGGVTAST THQWTTLSGS GAEDVRVMTR  600
KSVDDPGRPP GIILNAATSF WLPVPPSRVF GFLRDDSTRS EWDILSNGGV VQEMAHIANG  660
SHHGNAVSLL RVNNANSNQS NMLILQECCT DATGSYVVYA PVDVVAMNVV LNGGDPDYVA  720
LLPSGFAILP DGPAGSPDAG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIACTVDRIK  780
AAVVVSAGDN AGVAAR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2492460.0AK249246.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177398.10.0homeobox-leucine zipper protein ROC7-like
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
SwissprotA3BPF20.0ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7
TrEMBLM0WKA70.0M0WKA7_HORVV; Uncharacterized protein
STRINGMLOC_52316.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2