PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 260aa MW: 28246.9 Da PI: 8.9295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52196.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	233	254	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp+C+k F ++ +L+ H + H MLOC_52196.1 233 CPKCSKGFQDPVLLVEHVEReH 254 *****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1110.10	2.0E-9	62	122	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.57E-9	64	116	No hit	No description
Pfam	PF01428	3.4E-8	72	111	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.8	194	217	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	196	217	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.683	231	259	IPR007087	Zinc finger, C2H2
SMART	SM00355	12	231	254	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	233	254	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MIVQVFCLQH RSYTSHKCPK ANNKDVTVVV CPLCAKGVRL NPNEDANITW ESHVNTDCDP 60 SNYQRATKKK KCPVPGCREA LTFSNTIMCK DCSKEHCLKH RFGPDHKCPG PRKPEPTFPF 120 SNMLRRSQKV EPRANSSSSS SSWWSSSLLN AASSFRSSAE AGMQKLSIAT SEAVQKAKDG 180 VTPSSSGSGS GLVEQCVQCP ARFSTVGALI EHAEKSHGNN SQPSRGKVTV DACPKCSKGF 240 QDPVLLVEHV EREHGGTSKA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52196.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251347	0.0	AK251347.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf113d20, mRNA sequence.
GenBank	AK360983	0.0	AK360983.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1130A19.
GenBank	AK367174	0.0	AK367174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2052H13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020157729.1	1e-167	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Swissprot	Q0D5B9	1e-138	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	M0WJV0	0.0	M0WJV0_HORVV; Uncharacterized protein
STRING	MLOC_52196.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	4e-94	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]