PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52192.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 558aa MW: 59003.1 Da PI: 4.3864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.2e-13 | 295 | 338 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq MLOC_52192.2 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-18 | 286 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-14 | 286 | 349 | No hit | No description |
PROSITE profile | PS50888 | 15.974 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-16 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-17 | 295 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 295 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM 60 TGFCCSAEFE AEVAALGETP ATIPLDSSSI GMHAQALLSN QPIWQSSGGA PGPDLLTGYE 120 AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD 180 AAAAADPGRL YAAASLNLFD GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA 240 QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR 300 RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD 360 SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE AGDEEEKEAE DQDMEPQVEV 420 RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA 480 AVPADRVRDS LLEVTREMYG GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH 540 HQVLGGYHHQ HLQYLAMD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 303 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52192.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375074 | 0.0 | AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177849.1 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q6YUS3 | 1e-174 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A287TCH8 | 0.0 | A0A287TCH8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52192.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-46 | bHLH family protein |