PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_52192.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 558aa MW: 59003.1 Da PI: 4.3864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_52192.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	6.2e-13	295	338	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq MLOC_52192.1 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338 58*******************7.....7*************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-18	286	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.73E-14	286	349	No hit	No description
PROSITE profile	PS50888	15.974	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-16	294	343	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-17	295	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-10	295	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM 60 TGFCCSAEFE AEVAALGETP ATIPLDSSSI GMHAQALLSN QPIWQSSGGA PGPDLLTGYE 120 AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD 180 AAAAADPGRL YAAASLNLFD GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA 240 QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR 300 RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD 360 SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE AGDEEEKEAE DQDMEPQVEV 420 RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA 480 AVPADRVRDS LLEVTREMYG GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH 540 HQVLGGYHHQ HLQYLAMD

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MGGGGDYHQQ SIIGGAAAHG HGGGGGAAVE AALRPLVGGS HGWDYCIYWR LSPDQRFLEM  60
TGFCCSAEFE AEVAALGETP ATIPLDSSSI GMHAQALLSN QPIWQSSGGA PGPDLLTGYE  120
AASNGGEKTR LLVPVAGGIV ELFASRYMAE EQQMAELVMA QCGGGGQAWQ ETEPQGFAWD  180
AAAAADPGRL YAAASLNLFD GAGGSGSGEP FLAGVQEDGG AGLGWQYAAE SSEPPSTVQA  240
QEYQQVHGSG VGRADSGSEG SDMQLGDPDD DGDGETQRGS GKDGGGKRQQ CKNLVAERRR  300
RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQKQ VKDLQDELED PNPAGGAGGD  360
SKAPDVLLDD HPPPGLDNDE DSPQQQPFPS AGGKRARKEE AGDEEEKEAE DQDMEPQVEV  420
RQVEGKEFFL QVLCSHKSGR FVRIMDEIAA LGLQITSINV TSYNKLVLNV FRAVMKDNEA  480
AVPADRVRDS LLEVTREMYG GGGGWSSPLP QPPAPPTSAK LDGMDGQAVP AAAGDHYQLH  540
HQVLGGYHHQ HLQYLAMD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	303	ERRRRKKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269\|PubMed:17138695, ECO:0000269\|PubMed:19825565, ECO:0000269\|PubMed:23385589}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_52192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375074	0.0	AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177849.1	0.0	transcription factor TDR-like
Swissprot	Q6YUS3	1e-174	TDR_ORYSJ; Transcription factor TDR
TrEMBL	A0A287TCH8	0.0	A0A287TCH8_HORVV; Uncharacterized protein
STRING	MLOC_52192.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5530	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-46	bHLH family protein

Publications ? help Back to Top
Endo M, et al. High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development. Plant Cell Physiol., 2009. 50(11): p. 1911-22 [PMID:19808807] Xu J,Wu M,He C [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae]. Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61 [PMID:20387456] Liu Z,Bao W,Liang W,Yin J,Zhang D Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development. J Integr Plant Biol, 2010. 52(7): p. 670-8 [PMID:20590996] Zhang D, et al. OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice. Plant Physiol., 2010. 154(1): p. 149-62 [PMID:20610705] Senapati PK,Behera S Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock. Bioresour. Technol., 2012. 117: p. 99-106 [PMID:22613886] Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content]. Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7 [PMID:23285852] Li L, et al. An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development. Planta, 2015. 241(1): p. 157-66 [PMID:25236969] Yi J, et al. Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration. Plant Physiol., 2016. 170(3): p. 1611-23 [PMID:26697896]