PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52138.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 191aa MW: 20316.4 Da PI: 10.9016 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.3 | 3.1e-09 | 120 | 142 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd Ck+ H++ MLOC_52138.6 120 VCNHFVRTGTCKFGDACKYFHPK 142 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.23 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-6 | 119 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-7 | 120 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 120 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MLAKKDREVR PKETRGAGDA AGQVLLRLLR QAVPGHRRRP QASSPGRPAP PRPCPLVRLR 60 PPPRLRPQPP LQACGAFPRT PCPPPPPLDP KPNPVSSSAE SHGGAPPLLQ PDGAILGQGV 120 CNHFVRTGTC KFGDACKYFH PKPHAVNPAL APSGPFPGAM VQQSNFLGTQ LNFIGYQTVE 180 GNSFSGDLFV A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52138.6 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-129 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A453ELP0 | 2e-52 | A0A453ELP0_AEGTS; Uncharacterized protein | ||||
STRING | MLOC_52138.6 | 1e-133 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 6e-09 | C3H family protein |