PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52134.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 330aa    MW: 36575.1 Da    PI: 4.9486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52134.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d+++++G g+W++ ++    ++R++k+c++rw +yl
     MLOC_52134.1 14 KGPWTPEEDQKLTDYIEKHGHGSWRALPKLAAgLNRCGKSCRLRWTNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding58.41.6e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
     MLOC_52134.1  68 RGKFTPEEEQTILQLHSVLGNK-WSAIAKHLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.992962IPR017930Myb domain
SuperFamilySSF466897.34E-3311109IPR009057Homeodomain-like
SMARTSM007173.9E-151364IPR001005SANT/Myb domain
PfamPF002493.5E-161462IPR001005SANT/Myb domain
CDDcd001673.94E-121662No hitNo description
PROSITE profilePS5129428.38763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2965118IPR009057Homeodomain-like
SMARTSM007177.6E-1867115IPR001005SANT/Myb domain
PfamPF002491.5E-1768113IPR001005SANT/Myb domain
CDDcd001678.81E-1470113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLTDYIE KHGHGSWRAL PKLAAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FTPEEEQTIL QLHSVLGNKW SAIAKHLPGR TDNEIKNFWN THLKKKLIQM  120
GFDPMTHRPR TDFFAALPQL IALANLRQLV EQRPWDDQSA NQLQADAVQA AKLEYLQCLL  180
QSAAAIATSP SSSSINTIPT DLEQIGLLSP SQMSSLSSLS SPRMLEGING QDLVTEQVPD  240
IQIPSSSFFE QPIINGINQN SDYSANSGEG ENGKQKPLLL SEDSLPPLAD FPISNLGDAC  300
STSSCDAEGN STQLPIWSDS FYDEFMNEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52134.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171818.10.0transcription factor MYB39-like
SwissprotQ9S9Z21e-102MYB93_ARATH; Transcription factor MYB93
TrEMBLM0WJK30.0M0WJK3_HORVV; Uncharacterized protein
STRINGMLOC_52134.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-102myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]