PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_52077.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 884aa    MW: 95262.4 Da    PI: 5.8972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_52077.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.3e-20138193156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  MLOC_52077.1 138 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 193
                   688999***********************************************998 PP
2START124.81.1e-393566011206
                   HHHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
         START   1 elaeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                   ela +aa+ l+k+   +ep+W + +  ++ + ev+  +e ++                    ++e  r+++vv+m++ +lv  +ld + +W e ++ 
  MLOC_52077.1 356 ELASTAADHLIKMCRTSEPLWARRRgAGSSSGEVMDAEEHARMlswpidsgkqqqtdvahaARTEGTRDCAVVIMNSITLVDAFLDAN-KWMELFPs 451
                   5788999******************978888888888877777888888888899999999999************************.******** PP

                   ...EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE.......-TTS--.-TTSEE-EESSEEEEE CS
         START  78 ...kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd.......seqkppesssvvRaellpSgili 154
                      ka t++vi  g        g l lm+ae q+lsplvp R++vf Ry+     +g+w ivd   d       ++q+++  ss+vR++++pSg++i
  MLOC_52077.1 452 ivcKARTIQVIHHGaasghlgsGSLILMQAEVQFLSPLVPaREVVFFRYCVHnADEGTWSIVDFPADgfqeellQQQQQQ-ASSLVRCRRRPSGCII 547
                   ****************************************************9999******987663322221333433.9*************** PP

                   EEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 155 epksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                   ++ +ng+s+v+wveh+++ g     + +++  v  g+a+ga +wv+ lqrqce+
  MLOC_52077.1 548 QDAPNGYSRVVWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 601
                   *****************98876549***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-20120196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-21123196IPR009057Homeodomain-like
PROSITE profilePS5007117.07135195IPR001356Homeobox domain
SMARTSM003891.1E-19136199IPR001356Homeobox domain
CDDcd000867.02E-19138196No hitNo description
PfamPF000463.7E-18138193IPR001356Homeobox domain
PROSITE patternPS000270170193IPR017970Homeobox, conserved site
PROSITE profilePS5084842.662347604IPR002913START domain
SuperFamilySSF559612.88E-26350603No hitNo description
CDDcd088751.66E-96351600No hitNo description
SMARTSM002342.6E-18356601IPR002913START domain
PfamPF018521.7E-32357601IPR002913START domain
SuperFamilySSF559615.49E-16618863No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAAGGSS ADALFASPLM PNPGALAGFM SSSSAMPFHH HFSTNLIPKE  60
EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFAD VDDDRDQKPQ HSEPDGAGAG  120
HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ  180
VKFWFQNRRT QMKAQQDRAD NVILRAENES LKTDNYRLQA AIRNVVCPSC GQAAVIGDMS  240
YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN  300
VYSRHFVEQQ HGAMDLMALQ QQMASGAHGI AATASYLQGP MTPVVVQEQD KQLVMELAST  360
AADHLIKMCR TSEPLWARRR GAGSSSGEVM DAEEHARMLS WPIDSGKQQQ TDVAHAARTE  420
GTRDCAVVIM NSITLVDAFL DANKWMELFP SIVCKARTIQ VIHHGAASGH LGSGSLILMQ  480
AEVQFLSPLV PAREVVFFRY CVHNADEGTW SIVDFPADGF QEELLQQQQQ QASSLVRCRR  540
RPSGCIIQDA PNGYSRVVWV EHMEVVGEEK PLQPVFKDHV AGGAAFGATR WVSVLQRQCE  600
RLASELARSI ADQGVIRTPE ARTNMMKLSQ RMITAFCANI SASGSQSWTA LSDSTEDTVR  660
ITTRKNTEPG QPSGVILTAV STSWLPFSHQ QVFELLADEQ QRCQLEIMSN GGSLHEVAHI  720
ANGSHPRNCI SLLRINSASN SSQNVELLLQ ESSIHPDGGS LVVFATVDVD AIQVTMSGED  780
PSYIPLLPMG FAIFPATSPS PGATSSDTTG NGESSPGNAD EPATGCLLTV GMQVLASAVP  840
SAKLNLSSVT AINSHICNTI HQITTALKGA GGSRTEPAPA CSDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_52077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731770.0AK373177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3023B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163828.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLM0WJB80.0M0WJB8_HORVV; Uncharacterized protein
STRINGMLOC_52077.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7