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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_52077.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 884aa MW: 95262.4 Da PI: 5.8972 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.3e-20 | 138 | 193 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k MLOC_52077.1 138 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 193 688999***********************************************998 PP | |||||||
2 | START | 124.8 | 1.1e-39 | 356 | 601 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela +aa+ l+k+ +ep+W + + ++ + ev+ +e ++ ++e r+++vv+m++ +lv +ld + +W e ++ MLOC_52077.1 356 ELASTAADHLIKMCRTSEPLWARRRgAGSSSGEVMDAEEHARMlswpidsgkqqqtdvahaARTEGTRDCAVVIMNSITLVDAFLDAN-KWMELFPs 451 5788999******************978888888888877777888888888899999999999************************.******** PP ...EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE.......-TTS--.-TTSEE-EESSEEEEE CS START 78 ...kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd.......seqkppesssvvRaellpSgili 154 ka t++vi g g l lm+ae q+lsplvp R++vf Ry+ +g+w ivd d ++q+++ ss+vR++++pSg++i MLOC_52077.1 452 ivcKARTIQVIHHGaasghlgsGSLILMQAEVQFLSPLVPaREVVFFRYCVHnADEGTWSIVDFPADgfqeellQQQQQQ-ASSLVRCRRRPSGCII 547 ****************************************************9999******987663322221333433.9*************** PP EEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 ++ +ng+s+v+wveh+++ g + +++ v g+a+ga +wv+ lqrqce+ MLOC_52077.1 548 QDAPNGYSRVVWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 601 *****************98876549***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-20 | 120 | 196 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 123 | 196 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 135 | 195 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 136 | 199 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.02E-19 | 138 | 196 | No hit | No description |
Pfam | PF00046 | 3.7E-18 | 138 | 193 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 170 | 193 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.662 | 347 | 604 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-26 | 350 | 603 | No hit | No description |
CDD | cd08875 | 1.66E-96 | 351 | 600 | No hit | No description |
SMART | SM00234 | 2.6E-18 | 356 | 601 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-32 | 357 | 601 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.49E-16 | 618 | 863 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MFGDCQVLSS MAAMAAGGSS ADALFASPLM PNPGALAGFM SSSSAMPFHH HFSTNLIPKE 60 EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFAD VDDDRDQKPQ HSEPDGAGAG 120 HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ 180 VKFWFQNRRT QMKAQQDRAD NVILRAENES LKTDNYRLQA AIRNVVCPSC GQAAVIGDMS 240 YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN 300 VYSRHFVEQQ HGAMDLMALQ QQMASGAHGI AATASYLQGP MTPVVVQEQD KQLVMELAST 360 AADHLIKMCR TSEPLWARRR GAGSSSGEVM DAEEHARMLS WPIDSGKQQQ TDVAHAARTE 420 GTRDCAVVIM NSITLVDAFL DANKWMELFP SIVCKARTIQ VIHHGAASGH LGSGSLILMQ 480 AEVQFLSPLV PAREVVFFRY CVHNADEGTW SIVDFPADGF QEELLQQQQQ QASSLVRCRR 540 RPSGCIIQDA PNGYSRVVWV EHMEVVGEEK PLQPVFKDHV AGGAAFGATR WVSVLQRQCE 600 RLASELARSI ADQGVIRTPE ARTNMMKLSQ RMITAFCANI SASGSQSWTA LSDSTEDTVR 660 ITTRKNTEPG QPSGVILTAV STSWLPFSHQ QVFELLADEQ QRCQLEIMSN GGSLHEVAHI 720 ANGSHPRNCI SLLRINSASN SSQNVELLLQ ESSIHPDGGS LVVFATVDVD AIQVTMSGED 780 PSYIPLLPMG FAIFPATSPS PGATSSDTTG NGESSPGNAD EPATGCLLTV GMQVLASAVP 840 SAKLNLSSVT AINSHICNTI HQITTALKGA GGSRTEPAPA CSDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_52077.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373177 | 0.0 | AK373177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3023B13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163828.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | M0WJB8 | 0.0 | M0WJB8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_52077.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |