PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MLOC_51688.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Nin-like

Protein Properties

Length: 216aa MW: 22969.1 Da PI: 8.9151

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_51688.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	35.9	1.5e-11	1	21	32	52
RWP-RK 32 LKriCRqyGIkRWPhRkiksl 52 +KriCRq+GI+RWP+Rki+++ MLOC_51688.1 1 MKRICRQHGISRWPFRKISKV 21 7*****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	8.1E-9	1	21	IPR003035	RWP-RK domain
PROSITE profile	PS51519	11.411	1	42	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-20	103	176	No hit	No description
PROSITE profile	PS51745	16.761	107	204	IPR000270	PB1 domain
SMART	SM00666	7.7E-19	107	204	IPR000270	PB1 domain
Pfam	PF00564	1.7E-13	108	176	IPR000270	PB1 domain
CDD	cd06407	2.35E-33	108	180	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.2E-24	108	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MKRICRQHGI SRWPFRKISK VNRALGKIRR AAIESVDCSR KQTTADASSS SSSSSSRRAP 60 APHLPCLSSA LGEDTSSQDS SQDPPPLTKA TLPKSLLRRS NGAVGELVTI KASYKGDIIR 120 FRVPCSAGVA AVKEEVAKRL GLDARAFDVK YLDDDHEWVL LSCDADFQEC LDVAPVLPAS 180 ASTAVAGGAA ASVSPVVRLM VQEVADNLRS SCGSSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_51688.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364314	0.0	AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153726.1	1e-113	protein NLP3-like isoform X2
TrEMBL	M0WI04	1e-153	M0WI04_HORVV; Uncharacterized protein
STRING	MLOC_51688.1	1e-154	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-23	NIN like protein 7