![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_51361.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
bHLH |
Protein Properties |
Length: 181aa MW: 19724.9 Da PI: 5.9472 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_51361.2 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Hvu&pid=MLOC_51361.2) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 16.5 | 1.5e-05 | 25 | 41 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS
HLH 39 sKaeiLekAveYIksLq 55
+Ka+iL +A+eY+ksLq
MLOC_51361.2 25 DKASILDEAIEYLKSLQ 41
8***************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 181 aa
Download sequence Send
to blast |
MVTSLTYNLP MFLCFPIFAL YFQADKASIL DEAIEYLKSL QMQVQVMWMT SGMAPMMFPG 60 SHQFMPPMAV GMNSACLPAA QGLNQMARVP YMNHTLSNHI PMNPSPAMNP MYVANQMQNI 120 QLREASNHFL HPDGGLATAP QVAGPYAYTP QVAPKNQIPE VPDCTVVPTS GPGQPPAPDG 180 I
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK358551 | 0.0 | AK358551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1078I07. |
GenBank | AK364247 | 0.0 | AK364247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023A20. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]
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