PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51337.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 427aa    MW: 48066.4 Da    PI: 5.0434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51337.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.3e-12261307147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+ WT+eE++ ++ + k +G g+Wk I++++ +++t+ q+ s+ qk+
     MLOC_51337.2 261 RKFWTKEEHKSFLYGLKVYGRGDWKNISKHFVTTKTPIQVSSHAQKF 307
                      678******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.209256312IPR017930Myb domain
SuperFamilySSF466891.94E-15258312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-8259313IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-13260310IPR006447Myb domain, plants
SMARTSM007173.1E-10260310IPR001005SANT/Myb domain
PfamPF002497.8E-8264306IPR001005SANT/Myb domain
CDDcd001671.22E-8264308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDSIVNHGWT SSEVEEAWSL IARLNSNKIM YDDNDDKNKK HNYIVNSLHA LFPSKTMKQV  60
TNLYVDLAME MHMIQQREGT RGSPQNSFTF CDPANVNYVL PGEENHASST HGVYTMGGHV  120
NENFGVREEA TIMDNNGLSF GCAMEDTGIT VTDEAPHMVD NNKMEVLENN ISIDQPIFAP  180
HQWGFWTGEE HSMGDLVNEN YEVQEDKDTT MDDNGFSFRY ALEDTRITKT EEAPMMVDEN  240
KMVVLENNTS TNRPVVASHQ RKFWTKEEHK SFLYGLKVYG RGDWKNISKH FVTTKTPIQV  300
SSHAQKFFKR IQQKASSGTK RYSINDVGLH DNELLPANNS SSPQQALSFT GLNNGPSFKL  360
QAPTSSFTVM NNLAQCTPSI YNNQQVGQQP MWSEQQMMGS VAAVMDGVAN YVPDGQQGSA  420
YFYLGNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51337.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167095.10.0uncharacterized protein LOC109752608
TrEMBLA0A3B6TAG60.0A0A3B6TAG6_WHEAT; Uncharacterized protein
STRINGMLOC_51337.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.25e-21MYB_related family protein