PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5109.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 817aa    MW: 92866.2 Da    PI: 8.4728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5109.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-1677175299
                  EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  fkvl     ++ +rl +p++f+ ++        + + + +++ tl+ ++g++W v+l  +k +++++lt+GW +Fv +n L+e +f++F +d+++ f 
  MLOC_5109.1  77 FKVL--VGDFA-RRLEIPRDFLGHIpemglggsNVPAAPPVKATLKRSEGKTWAVEL--EKVDRGVFLTTGWPKFVVENALREYEFLLFGYDKKMHF- 168
                  5555..34444.4699******777***99987555568899***************..********************************998999. PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                   +v+vf +
  MLOC_5109.1 169 -MVSVFGR 175
                  .9999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-1972178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-1972178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.22473176IPR003340B3 DNA binding domain
CDDcd100171.44E-1574173No hitNo description
SMARTSM010191.5E-1476176IPR003340B3 DNA binding domain
PfamPF023622.2E-1377175IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MTWRTRRQVE GNKEGALSAF DRAGEAAVIL PRPLRPSLPP NHHPSTRSSP RAMNMGGDRS  60
AGFPGEEDEG RPRPRFFKVL VGDFARRLEI PRDFLGHIPE MGLGGSNVPA APPVKATLKR  120
SEGKTWAVEL EKVDRGVFLT TGWPKFVVEN ALREYEFLLF GYDKKMHFMV SVFGRNACEK  180
AVRSSGIGAQ ATTSLERKLP CDIFLTCKRG YTGDELMKTT NNPRRSHSLV MTPDQSDTKI  240
VPVRGSTQGN VHIPSQSFAD IHLHEVDGLK DELKTYLLSK VPMDDDKAKA IAEVMRRLHV  300
DRVTVDLFCA TLCLYKWNSD AAAEVFNTCR GKPQIQNQFL KQKLVLQFDF IKRELRHFFP  360
TGDDCSPQTH DSRKNSLVVP NVSTQPQQYY LPAVKSKLVD DHELCDLLYK QKRRIVKWRP  420
QRISETPRRS PRLAHLKNSC GSTESALKEK PEVLESSLSS TTDRVEDRTG QAHLLYEKPD  480
RVSKGDNQHA IGSLSLDFKR LKKTLCESVL SEKPQHHQEN EEKIDQGNNG EIFEEQVDRN  540
AAETSESFMG RDCIDSSPPT KSEVSSMRIN ELCLTWKPSV HTNSFENVLL HIQCNNFTKT  600
ITHVQGIIRG SPSDLHCSAI IEAVVQKEIL KWDSCLQDVD AQRVVIALLE HAKKIKEIHN  660
FNMESRKEEF STKLQDQLKW QLKELEGVCT SLEFDYKKAT CDSNIAVSTS QEQKKKLQAL  720
QYEIKGLQQS MMMEDEIQKL VRQVAEHESL VQKSLMERVR VKTVLKSYAQ ILVEVKERLA  780
SNELGLIDVD ALVKIEMDNL RKEIEISKGR LLNIIFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165473.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A287LHU30.0A0A287LHU3_HORVV; Uncharacterized protein
STRINGMLOC_5109.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-13B3 family protein