PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_51005.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HRT-like
Protein Properties Length: 400aa    MW: 43888.5 Da    PI: 9.9178
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_51005.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like566.7e-18154184131
      HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                   +CGv+ledGs C + P++gRKRCe HKG+R+
  MLOC_51005.1 154 VCGVMLEDGSSCLEDPMEGRKRCELHKGRRV 184
                   7*****************************7 PP
2HRT-like27.84.2e-09316341228
      HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                   CGv +++G  Ck +Pv gR RCeeH G
  MLOC_51005.1 316 CGVVTDNG-YCKLEPVIGRERCEEHRG 341
                   *******9.6***************98 PP
3HRT-like49.85.8e-16361390130
      HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                   +CG++ +dGs+Ck+qP+  RKRC+ HKG+R
  MLOC_51005.1 361 VCGARASDGSPCKNQPIARRKRCALHKGQR 390
                   7****************************9 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGSKKAAEKT EGQLLGVFDY AWNKLQNGAC RREEILLKLE QGSNRLSLLS RVRHLKQRVF  60
GEKAGIKINS SGSVEISSSS MKNMLPRVRT FVGFRPRLVN SGDDLNEASD IHRKCTPQAN  120
TAGKQAHRRS EGYKVKKIDV IKRRTAPIRE AEAVCGVMLE DGSSCLEDPM EGRKRCELHK  180
GRRVRVAYSR KVSSSSSTCQ VAIPTVESIP QQTANPSKRD QAWQTSADQS KNLSTNAKEP  240
SWQRNSFKAN EMKIGEAPTE DEAYGTSHAE SQFHEDEPCG RKWFERLKAQ KSANAPSSRG  300
QGCQPREANN DASALCGVVT DNGYCKLEPV IGRERCEEHR GIEVTGASSA PCSGRSVLPS  360
VCGARASDGS PCKNQPIARR KRCALHKGQR ACCASAPSVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_51005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0013170.0AJ001317.1 Hordeum vulgare Hotr1 gene.
GenBankAK2520400.0AK252040.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148d05, mRNA sequence.
GenBankAK3627340.0AK362734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159698.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A287HPI40.0A0A287HPI4_HORVV; Uncharacterized protein
TrEMBLM0WFH40.0M0WFH4_HORVV; Uncharacterized protein
STRINGMLOC_51005.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-20effector of transcription2