 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_50966.5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
CO-like |
| Protein Properties |
Length: 382aa MW: 41758.4 Da PI: 5.1434 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_50966.5 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 21 | 7.1e-07 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
C+ ++e++ +++C+++ lC +C + H+
MLOC_50966.5 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35
6***************************9954 PP
|
| 2 | zf-B_box | 23.1 | 1.5e-07 | 47 | 85 | 5 | 37 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
C+++ ++++ C + + lC++C ++H g H
MLOC_50966.5 47 LCDRCASQPAAVRCLEENISLCQNCDWNGH-GatslaagH 85
7****************************9.435555555 PP
|
| 3 | CCT | 62.1 | 1.8e-21 | 325 | 368 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+
MLOC_50966.5 325 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 368
6789*************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANSLSR RHMRTLLCDR CASQPAAVRC 60
LEENISLCQN CDWNGHGATS LAAGHLRQTI NCYSGCPSSE ELARIWSFDF DAPSAAAEPN 120
CEEGISMMSI NDSGVSNHCH DQQDSSLLDI ANTSLISDPH TGEKLKSSGE MNLRPLPTHQ 180
PAQSVSMAPK VPCVTDDDMF NDGSIYENFC VDDAGLTFEN YEELFGTPHI QTEQLFDDAG 240
IDSYFGMKEM PAADCNEQLK PMQPECSNAV SADSSLCVPA RQAISSISLS FSGFTGEGNA 300
GDHQDCGVSP WLHPGPEGSS ASGSRGSALS RYMEKKKRRK FDKKIRYASR KARADVRKRV 360
KGRFVKAGEA YDYDPLCDTR SY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 334 | 338 | KKKRR |
| 2 | 334 | 339 | KKKRRK |
| 3 | 335 | 339 | KKRRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK252666 | 0.0 | AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G48250.1 | 2e-88 | B-box type zinc finger protein with CCT domain |
