PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_498.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 372aa    MW: 42116 Da    PI: 4.7316
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_498.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.99.3e-35561472102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed+++++++sws+ gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+ ik
    MLOC_498.8  56 FLTKTYDLVEDPATDQVVSWSRAGNSFVVWDPHVFADALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLKMIK 143
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    MLOC_498.8 144 RRKP 147
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3852145IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3552145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6052145IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3256145IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-195679IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434095119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-19107119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDAAVPDGIV KEEEGLLLLH EERPPAAGPP QRQRQEEDGA LPRPMEGLHE AGPPPFLTKT  60
YDLVEDPATD QVVSWSRAGN SFVVWDPHVF ADALLPRLFK HSNFSSFVRQ LNTYGFRKVD  120
PDRWEFANEG FLRGQRHLLK MIKRRKPPSN APPSQQQALT SCLEVGEFGF EEEIDRLKRD  180
KNLLITEVVK LRQEQQATKD NVQAMENRLQ AAEQKQAQMM GFLARAMRNP LFFQQLVQRQ  240
DKRKELEDAI SKKRRRPIDN VPFYGSGVTT SQSEQLDSQF LFDSGVLSDP GTHRLENLAQ  300
NIQDLGQGKT DEGKKDEANG QVELNNEFWA ELFSDDFGDG DGSGLSELEG RRPEDIDELA  360
QQLGYLSSTS PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-255114512120Heat shock factor protein 1
5d5u_B3e-255114521129Heat shock factor protein 1
5d5v_B3e-255114521129Heat shock factor protein 1
5d5v_D3e-255114521129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144LKMIKRR
2241255KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_498.8
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584600.0AK358460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077C17.
GenBankAK3632630.0AK363263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013N08.
GenBankHM4460250.0HM446025.1 Hordeum vulgare subsp. vulgare heat shock factor A2c (HsfA2c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147337.10.0heat stress transcription factor A-2c-like isoform X1
RefseqXP_020147338.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLF2D3K20.0F2D3K2_HORVV; Heat shock factor A2c
STRINGMLOC_498.90.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-108heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]