PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_49032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 17512.5 Da PI: 4.8842 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 6.9e-06 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L+el+P+a K +Ka++L + ++Y+k Lq MLOC_49032.1 3 ALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 31 79******8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.484 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-10 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.23E-6 | 1 | 35 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-9 | 2 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MKALQELVPS ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAAVGP LAAGLSSESS 60 GNGNGTSSSG DGNGEDNNGG STLRATEQQV ARLMEEDMGT AMQYLQGKGL CLMPISLASV 120 ISSATSSSLR SATRPAGNAG GPLHEGGSPA SPRLVNSGVS VDGSRTIGDD GRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_49032.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374225 | 0.0 | AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170436.1 | 1e-87 | transcription factor bHLH82-like | ||||
Swissprot | Q9LSQ3 | 9e-55 | BH082_ARATH; Transcription factor bHLH82 | ||||
TrEMBL | A0A287V199 | 1e-118 | A0A287V199_HORVV; Uncharacterized protein | ||||
TrEMBL | M0WCV3 | 1e-119 | M0WCV3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_49032.1 | 1e-120 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 5e-34 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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