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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_47091.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 382aa MW: 41805.8 Da PI: 5.6599 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.6 | 1.6e-25 | 41 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 f+k tpsd+++++rlv+pk +ae++ +++ ++ l +ed+ g+ W+++++y+++s+ yv+tkGW +Fv++ L +gD+v F++ g+ +++ MLOC_47091.2 41 FEKMVTPSDTGTLNRLVIPKYHAEKCfpldASSNGNGLLLNFEDSAGKPWRFRYSYWNNSQCYVMTKGWAGFVRETLLGAGDTVFFSRGvGEaARGR 137 8999*************************9666678899************************************************6668899*** PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v ++r+ MLOC_47091.2 138 LFVDWRRR 145 *****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-33 | 34 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.83E-24 | 39 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.69E-20 | 40 | 128 | No hit | No description |
Pfam | PF02362 | 1.3E-23 | 41 | 145 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 41 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-16 | 41 | 146 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.100.10.30 | 6.3E-9 | 192 | 254 | IPR001229 | Jacalin-like lectin domain |
SuperFamily | SSF51101 | 3.79E-20 | 192 | 299 | IPR001229 | Jacalin-like lectin domain |
Gene3D | G3DSA:2.100.10.30 | 3.4E-9 | 257 | 300 | IPR001229 | Jacalin-like lectin domain |
SuperFamily | SSF51101 | 5.23E-12 | 314 | 374 | IPR001229 | Jacalin-like lectin domain |
Gene3D | G3DSA:2.100.10.30 | 1.7E-9 | 315 | 372 | IPR001229 | Jacalin-like lectin domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0030246 | Molecular Function | carbohydrate binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEFTTITAST AADGRPWTPP LAADHEADEA AAAAVVKEYM FEKMVTPSDT GTLNRLVIPK 60 YHAEKCFPLD ASSNGNGLLL NFEDSAGKPW RFRYSYWNNS QCYVMTKGWA GFVRETLLGA 120 GDTVFFSRGV GEAARGRLFV DWRRRRGPDV VLSSPRQRGF TLLSVGNDGF AIACPDPHLE 180 GDGVKEVDKA YITKIGPWGG NRGIFNDINK SPLRLNSVTI RSGEVIYSLA FSYSDNYGKQ 240 HHAGPWGGCK DFSYGSFDTY GPFGGGVGIP FQSPVTSNGS IVGFFAHAEW VVESIGLYVN 300 SESKLWEPTK GQDLVTKIGP WGGDSGTPND LDVLPRRLMS VVVHNSTVIN SLTFAYIDWD 360 GQQQTAGPWG WTPEPFDGKI DT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-48 | 37 | 145 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-48 | 37 | 145 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_47091.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193609.1 | 0.0 | uncharacterized protein LOC109779403 | ||||
TrEMBL | A0A287QDB4 | 0.0 | A0A287QDB4_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QDD2 | 0.0 | A0A287QDD2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QDI1 | 0.0 | A0A287QDI1_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QDI6 | 0.0 | A0A287QDI6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_47091.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-48 | B3 family protein |