PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_45114.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16257.5 Da PI: 9.7585 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.6e-11 | 89 | 124 | 1 | 39 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKls 39 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s+++s MLOC_45114.3 89 QRMTHIAIERNRRRQMNEYLAVLRSLMPES---YSRRVS 124 79***************************9...888866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.91E-10 | 79 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-9 | 87 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.91E-8 | 87 | 122 | No hit | No description |
PROSITE profile | PS50888 | 10.918 | 88 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-9 | 89 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MTLDALCAAT DVLVYDTFNA AAAASAAPAE DTLLFGDAAG SAWMAGSAPA AAAQAVPAVP 60 VEEGEKAQGR RKRRRRARSC KNREEAESQR MTHIAIERNR RRQMNEYLAV LRSLMPESYS 120 RRVSTHAHIV APRRIPDTFS TPCVEFLR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 75 | RRKRRRR |
2 | 70 | 74 | RKRRR |
3 | 70 | 77 | RKRRRRAR |
4 | 89 | 100 | RMTHIAIERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_45114.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662981 | 1e-56 | AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence. | |||
GenBank | AP014960 | 1e-56 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-56 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855235 | 1e-56 | CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174319.1 | 1e-39 | transcription factor bHLH94-like | ||||
TrEMBL | A0A287JBR9 | 1e-46 | A0A287JBR9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_45114.1 | 1e-79 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 8e-16 | bHLH family protein |