PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_45114.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 307aa    MW: 33371.1 Da    PI: 8.4575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_45114.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-1489140155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++++k+L+
  MLOC_45114.2  89 QRMTHIAIERNRRRQMNEYLAVLRSLMPES---YSRRGDQASIVGGAIDFVKELE 140
                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.06E-1587144No hitNo description
SuperFamilySSF474591.31E-1888166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.97488139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-1289140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1589158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-1294145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTLDALCAAT DVLVYDTFNA AAAASAAPAE DTLLFGDAAG SAWMAGSAPA AAAQAVPAVP  60
VEEGEKAQGR RKRRRRARSC KNREEAESQR MTHIAIERNR RRQMNEYLAV LRSLMPESYS  120
RRGDQASIVG GAIDFVKELE QLLQSLEAQK RTLLAEQQQE HRPLPNRDAM PLPSATVTAA  180
ATTSGGEGEH ASATRDTAGP PFAGFFTYPQ YVCRLPPRDD ADDRAGAADI EVTLVETHAS  240
VRVMAPRRPG QLLKMVAGME ALMLTVLHLN VTTLGSLALY SLSVKVHFRA VAYKIFVPFL  300
PYFLMKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975RRKRRRR
27074RKRRR
37077RKRRRRAR
489100RMTHIAIERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_45114.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174319.11e-133transcription factor bHLH94-like
SwissprotQ9C7T41e-58BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A446LFM51e-136A0A446LFM5_TRITD; Uncharacterized protein
STRINGMLOC_45114.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]