PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_45055.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 332aa    MW: 35888.1 Da    PI: 6.6208
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_45055.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27121181158
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   +dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y+geH++
  MLOC_45055.1 121 VDDGHSWRKYGQKDILGAKHPRGYYRCTHRksqGCAATKQVQRADEDPTLFDVIYHGEHTC 181
                   59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-28109181IPR003657WRKY domain
PROSITE profilePS5081122.538116179IPR003657WRKY domain
SuperFamilySSF1182906.67E-25119181IPR003657WRKY domain
SMARTSM007741.9E-39121183IPR003657WRKY domain
PfamPF031065.2E-27122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MESVDENGGS RLVVTELGHI KELVRQLGVN LGGCPEHCKR LAAQIFDVTE RSIGMIMSGH  60
FDCPKRSAAG LDSPPFSATP SPLSDVSGMP FHTNNKKRKI MEKRKHQVRV SSEVGGAETP  120
VDDGHSWRKY GQKDILGAKH PRGYYRCTHR KSQGCAATKQ VQRADEDPTL FDVIYHGEHT  180
CIHKTVAALA AGHAEENPGA SRLLQNLSTS LTVNTEGLTA TAGHQGCSTT TSFCFSSQAA  240
RVLAPQEHYP FSMPSTPENC FGQGASLSTS LEPSPVTSDS NRFSMTPFQA EWRARSELDE  300
VVSALVAAGA PAMEETPFSL DGFEFDVSGF FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22121181868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_45055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770660.0AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200629.10.0WRKY transcription factor WRKY62-like
TrEMBLM0W8U10.0M0W8U1_HORVV; Uncharacterized protein
STRINGMLOC_45055.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.28e-37WRKY family protein