PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44850.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 254aa    MW: 27977.6 Da    PI: 4.7875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44850.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH375.9e-1271117455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++ ++Er RR+r+N+++ +Lr ++P+ +      K++Ka+i + A+ YI  Lq
  MLOC_44850.1  71 KNIIMERDRRRRLNEKLYNLRGVVPNiS------KMDKASIIQDAIAYIEALQ 117
                   56689*********************66......*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-1766132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65667116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.88E-1368121No hitNo description
PfamPF000101.2E-971117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1572132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1473122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEADMDMSLD FSWETPNFFE AQVLELAVVD SMYLSAEDSL SGLYSCYDDS SSPDGASSWS  60
TATTRATRAS KNIIMERDRR RRLNEKLYNL RGVVPNISKM DKASIIQDAI AYIEALQEQE  120
RQLLAEISDL ETHNCTASVG SQAEEDSADL PRRRKMRRTS SASSINDAIT SPVAYPVEIL  180
ELDVTNVSEK LSVVSLRHGK ARDAMAKVCG ALQSLCLKVI TASVTTVAGS MVHTIFVEVT  240
IHRFAVFPTQ SIAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598500.0AK359850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176412.11e-159transcription factor bHLH35-like isoform X3
TrEMBLA0A287I9501e-173A0A287I950_HORVV; Uncharacterized protein
STRINGMLOC_44850.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.22e-42bHLH family protein