PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_44455.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 308aa    MW: 32700.5 Da    PI: 7.0068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_44455.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY832.9e-26125186159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDg++WrKYGqK++ g+ +pr+Y+rCt++   gC + k+v+r++ dp +++++Y+g+H++ 
  MLOC_44455.1 125 LDDGFSWRKYGQKDILGAMYPRAYFRCTHRhtqGCYASKQVQRAHGDPLLFDVVYHGNHTCA 186
                   59***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-27112186IPR003657WRKY domain
SuperFamilySSF1182909.55E-25119186IPR003657WRKY domain
PROSITE profilePS5081121.368120183IPR003657WRKY domain
SMARTSM007742.4E-38125187IPR003657WRKY domain
PfamPF031061.1E-24126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEQRCALATE LAQVLDTVRQ LEAHMGVKGG ADGGETCRAL VSSMRSSVDR SIHIAMSSCC  60
VEGRVLGAPE SPPSADGSPR SGGSDQAADS PCRGAHAAGQ SKKRKTLPKW STQVRVNSVE  120
DVGPLDDGFS WRKYGQKDIL GAMYPRAYFR CTHRHTQGCY ASKQVQRAHG DPLLFDVVYH  180
GNHTCAQGKH CNSQRPQPAA SGEHWQPQPA GGQEQISVGQ KTGGGAPGVA APFSFPSKQA  240
GADTGSDFPA GCAITASPFM SPATPECKVS CRNVPDVELS STTESPMGEM DFMLQLADAD  300
FLDNSRYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19117185168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_44455.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3563390.0AK356339.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1033G17.
GenBankAK3579300.0AK357930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1065C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182144.10.0probable WRKY transcription factor 53
TrEMBLM0W7990.0M0W799_HORVV; Uncharacterized protein
STRINGMLOC_44455.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-42WRKY family protein