PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43923.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 348aa    MW: 40944.6 Da    PI: 10.3705
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43923.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.55.1e-0921595290
          FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                  ++++ +tr+gC a ++v +++d+ w++ + +++HnH+l+
  MLOC_43923.4 21 QTNSRSTRCGCLALMRVLRSEDKDWYICEHKTDHNHALS 59
                  467899******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-62259IPR004330FAR1 DNA binding domain
PfamPF105511.8E-26182274IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MFIGQNVRRN LCVHVRGRPL QTNSRSTRCG CLALMRVLRS EDKDWYICEH KTDHNHALSV  60
NCMEKLHWKS HRHIDRYTRD LVKQLRENNI SLSKVYSVVG SFFGSVKEVP FTKRSLKTLC  120
GKLSREQSEN DATKTIEVFN AMRAEDPEFK YSVQVDDDGR VKTLMWTTGR SIEQFKCFGD  180
DVTFDTTYKI NLYDMPFGLF VGVNNHFQSI IFGGVLMSDE KIDTFKWIFT EFFQMIGAPQ  240
PRTMLTDQAR AMEVAIEDVM KHTIHRWCKW HVLKKAKECL GPLLGKGMNS SRSSTRWCTM  300
LSVRKSLRMV GRVWLRIMVY RKIRFSPRYR RHEKSGLSHI LWMYSVRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43923.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590930.0AK359093.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1089E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-128putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_020197126.11e-124protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024313565.11e-128putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM0W5D10.0M0W5D1_HORVV; Uncharacterized protein
STRINGMLOC_43923.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-39FAR1-related sequence 5