PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43888.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 265aa    MW: 28831.5 Da    PI: 4.9658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43888.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-1194137755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     Er RR+r+N+++  +r ++P+      +K++Ka+i + Av YI +Lq
  MLOC_43888.2  94 VEERDRRRRLNEKLYAIRGVVPNI-----TKMDKASIIQDAVAYIEELQ 137
                   448********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1584152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1484151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.8587136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-1293142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-894137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.12E-7103141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSRAMEADMD ASLDFLELEA HLVFDLGSAA ADRYVMSKRW ISLADCCSSY LPAEDSLSGL  60
DSSCLNDSAG SPDGATSSPS TASTRTTRES KNVVEERDRR RRLNEKLYAI RGVVPNITKM  120
DKASIIQDAV AYIEELQEQE RRILAEVSDL EAGGCTAVVK SEASTGSEGV ENAGVGFSRR  180
KKMRRTSSSS SINDAVASPA THPVEIFELE VTPIEEKLAV VSMRHNNTQH VMAKMYKALD  240
SLCLKVITSS VAVADGRTVH TMFIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43888.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-94HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186745.11e-148transcription factor bHLH35-like
TrEMBLA0A287K0C00.0A0A287K0C0_HORVV; Uncharacterized protein
STRINGMLOC_43888.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.23e-33bHLH family protein