PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 24705.9 Da PI: 10.2811 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22 | 2.9e-07 | 37 | 104 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P as ++++ + + L A YI++L+ MLOC_43080.2 37 ERKDVEKNRRLHMKGLCLKLSSLIPAASphhhlrhyspssssppSTNKDAATQLDQLDSAAAYINQLR 104 56789*********************888**************7777777****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.588 | 33 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.72E-8 | 35 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-9 | 35 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MKSRRQAGRG GAVAADGNHH HTTSSGEDTG RCNTKMERKD VEKNRRLHMK GLCLKLSSLI 60 PAASPHHHLR HYSPSSSSPP STNKDAATQL DQLDSAAAYI NQLRARIDGL KRRKQAALSG 120 GCSSSVSAGD YKPQTAAALP VIEVRHRDGT LDVALASEAG RPFRLHEVIA VMEQEGAEVV 180 SASFSVVGDK IFYTVHSQAL CPRIGLDAGR VAQRLRGLAA AAAAAVSSSV LLT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-114 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183666.1 | 1e-120 | uncharacterized protein LOC109769325 | ||||
TrEMBL | A0A287JUX3 | 1e-167 | A0A287JUX3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_43080.2 | 1e-169 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP829 | 36 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10585.1 | 4e-17 | bHLH family protein |