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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_4129.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 25138.2 Da PI: 7.6761 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.2e-16 | 34 | 112 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++p +f++++ g+ ++++ le+++g s+++ + k++++ vl++GW Fvk +L+ D vvF+++g+s+f v +f+ MLOC_4129.5 34 QEMIVPDEFLRRFRGE--IPREINLETRNGHSYTIGV--AKYPDKLVLQAGWGVFVKTYDLRMDDCVVFRYKGNSQF--DVIIFD 112 5699*********776..6779***************..**********************************9999..777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.89E-19 | 18 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-18 | 19 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.223 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-5 | 24 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-12 | 34 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.34E-15 | 36 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGCERCERRD ERDYCDLDDR EKHFLMFIVD GCGQEMIVPD EFLRRFRGEI PREINLETRN 60 GHSYTIGVAK YPDKLVLQAG WGVFVKTYDL RMDDCVVFRY KGNSQFDVII FDRFGREKAF 120 SVITENAPPV QESYNSGTEN LDRSHGHSSP WKCSRLLKMP TILKGVLSLW ECSHLLKMQT 180 LLMGILSPCE CNHLLKNWMI LLVLVGPRKC THLLKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_4129.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174612.1 | 5e-95 | putative B3 domain-containing protein Os08g0325100 | ||||
Swissprot | Q6Z0D9 | 5e-50 | Y8347_ORYSJ; B3 domain-containing protein Os08g0324300 | ||||
TrEMBL | A0A287DXJ0 | 1e-155 | A0A287DXJ0_HORVV; Uncharacterized protein | ||||
STRING | Traes_4BS_5D04C29FF.2 | 1e-96 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-14 | B3 family protein |
Publications ? help Back to Top | |||
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