PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

MLOC_40602.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 100aa MW: 10678.9 Da PI: 6.2329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_40602.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.8	1.2e-11	13	95	5	81
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksg 81 +r +Pt+ e v++yL + +++++l+ +e i++v+i +eP+dL + + +a++ + +fF+++++k+ ++ ++ r++ g MLOC_40602.2 13 YRLNPTEVEAVTYYLPRLLSSDTLHGAEKlIHDVEISGCEPKDLAAryapapQ-AAGSGDRFFFTTSKSKNGSKLQSVRSAGGG 95 699******************7766655**********853555322.2244478*****9999999988876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	12.971	9	100	IPR003441	NAC domain
SuperFamily	SSF101941	5.1E-10	13	95	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MEGLDVDGIF QHYRLNPTEV EAVTYYLPRL LSSDTLHGAE KLIHDVEISG CEPKDLAARY 60 APAPQAAGSG DRFFFTTSKS KNGSKLQSVR SAGGGTGACC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_40602.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373272	1e-155	AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152646.1	1e-52	uncharacterized protein LOC109737913
Refseq	XP_020159480.1	1e-52	uncharacterized protein LOC109744740
TrEMBL	A0A287W6B0	2e-60	A0A287W6B0_HORVV; Uncharacterized protein
STRING	MLOC_40602.1	9e-66	(Hordeum vulgare)