PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_40602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 144aa MW: 15693.8 Da PI: 8.6808 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.6 | 4.2e-22 | 13 | 136 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +r +Pt+ e v++yL + +++++l+ +e i++v+i +eP+dL + + +a++ + +fF+++++k+ ++ ++ r++ g+W + k++++ + MLOC_40602.1 13 YRLNPTEVEAVTYYLPRLLSSDTLHGAEKlIHDVEISGCEPKDLAAryapapQ-AAGSGDRFFFTTSKSKNGSKLQSVRSAGGGTWTIQ-KTTQISH 107 699********************7766655**************853555322.2244488*************************976.5678888 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 g++vg k L f +kg++t Wvm+eyr MLOC_40602.1 108 -AGSKVGEVKNLSFK----KKGKSTGWVMEEYRC 136 .8899*********8....78899********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.929 | 9 | 144 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.2E-14 | 12 | 135 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.18E-20 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEGLDVDGIF QHYRLNPTEV EAVTYYLPRL LSSDTLHGAE KLIHDVEISG CEPKDLAARY 60 APAPQAAGSG DRFFFTTSKS KNGSKLQSVR SAGGGTWTIQ KTTQISHAGS KVGEVKNLSF 120 KKKGKSTGWV MEEYRCLLPE ATVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_40602.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373272 | 0.0 | AK373272.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3025L12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152646.1 | 2e-88 | uncharacterized protein LOC109737913 | ||||
Refseq | XP_020159480.1 | 2e-88 | uncharacterized protein LOC109744740 | ||||
TrEMBL | A0A287W6B0 | 3e-99 | A0A287W6B0_HORVV; Uncharacterized protein | ||||
STRING | MLOC_40602.1 | 1e-104 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-14 | NAC domain containing protein 58 |