 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_39632.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
DBB |
| Protein Properties |
Length: 389aa MW: 42024.8 Da PI: 7.0772 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_39632.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.5 | 1e-06 | 133 | 175 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+ ++ ++ C ++ lC+ C +e+H H++ p
MLOC_39632.1 133 QCDSCGVAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 175
7*****999*********************6678888888877 PP
|
| 2 | zf-B_box | 26.3 | 1.5e-08 | 182 | 214 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
+ ++C+ ++ek + +fC +++ l+C+dC + +H
MLOC_39632.1 182 KLPRCDICQEKAAFIFCVEDRALFCRDCDEPIH 214
5789**************************999 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0010100 | Biological Process | negative regulation of photomorphogenesis |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0080167 | Biological Process | response to karrikin |
| GO:0090351 | Biological Process | seedling development |
| GO:1902448 | Biological Process | positive regulation of shade avoidance |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MYVFGACAES AESGSKYQTK SKSRPVPCCF SVGYNHPRSA RVHEFPAASF PPQAHLPPSC 60
LLLAAALSHC RGCVHGPALI CTTRARLLLD PSPHCQSRLP FFLAAPLSLL RLKPSKALSG 120
QRESKKSRGM KIQCDSCGVA AATVVCCADE AALCARCDVE IHAANKLASK HQRLPLDALG 180
AKLPRCDICQ EKAAFIFCVE DRALFCRDCD EPIHVPGTLS GNHQRYLATG IRVGLGPVST 240
CAAGDHGASH DADHHAPPKV ACDHQPPAQP AASAQQVPSP PQFLPQDWAV DELLQFSDYE 300
SSDKLHKDST LGFKELEWFT ADMELFHDHA PKGGRAAMEV PEFFASQAAD DAAYYRQSRV 360
AATAGVRQSK KARVEIADDE DFFIVPDLG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK359068 | 0.0 | AK359068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1088K14. |
